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{"url": "https://mailman.ics.uci.edu/mailman/listinfo/icsb-mjolsness-tutorial", "content": "<!-- $Revision: 2.4 $ -->\r\n<HTML>\r\n <HEAD>\r\n <TITLE>Icsb-mjolsness-tutorial Info Page</TITLE>\r\n \r\n </HEAD>\r\n <BODY BGCOLOR=\"#ffffff\">\r\n\r\n <P>\r\n <TABLE COLS=\"1\" BORDER=\"0\" CELLSPACING=\"4\" CELLPADDING=\"5\">\r\n\t<TR>\r\n\t <TD COLSPAN=\"2\" WIDTH=\"100%\" BGCOLOR=\"#99CCFF\" ALIGN=\"CENTER\">\r\n\t <B><FONT COLOR=\"#000000\" SIZE=\"+1\">Icsb-mjolsness-tutorial --\r\n\tSignup for tutorial by E. Mjolsness, ICSB 2006</FONT></B>\r\n\t </TD>\r\n\t</TR>\r\n\t<tr>\r\n\t <td colspan=\"2\">\r\n\t <p> \r\n\t </td>\r\n\t </tr>\r\n\t <tr>\r\n\t <TD COLSPAN=\"1\" WIDTH=\"100%\" BGCOLOR=\"#FFF0D0\">\r\n\t <B><FONT COLOR=\"#000000\">About Icsb-mjolsness-tutorial</FONT></B>\r\n\t </TD>\r\n <TD COLSPAN=\"1\" WIDTH=\"100%\" BGCOLOR=\"#FFF0D0\">\r\n <FORM Method=POST ACTION=\"../listinfo/icsb-mjolsness-tutorial\"> English (USA)\r\n </FORM>\r\n <FORM Method=POST ACTION=\"../subscribe/icsb-mjolsness-tutorial\">\r\n </TD>\r\n\t </TR>\r\n\t <tr>\r\n\t <td colspan=\"2\">\r\n\t\t<P><!---->\"New Mathematical Methods for Systems Biology\"\r<br>\r<br>To register for this October 8 2006 tutorial at ICSB, please subscribe to this email list (in the \"Subscribing to ...\" section near the bottom of this page). You will receive an autogenerated email asking for confirmation that you want to join the email list. Confirm that you do (eg. following the link in the email you will receive), and you will be registered. To unregister from the tutorial, just unsubscribe from the email list.\r<br>\r<br>Abstract\r<br>Expectations and ambitions for the future of computational systems biology are ever growing, but several significant problems of applied mathematics and modeling stand in the way. These problems include the relations between stochastic and deterministic models and simulation algorithms, adequate models of molecular complexes, the role of spatial inhomogeneity at subcellular and multicellular scales, modeling biological graph structure and dynamics, inference from heterogeneous data sets, and the reuse and integration of modeling techniques across spatial scales from molecular to developmental and ecological. \r<br>\r<br>Fortunately, there are relevant branches of applied mathematics that have been underexploited in attacking these problems, and it\u2019s not too hard to understand their foundations. I suggest that the basic mathematical toolkit for systems biology will come to include not only such staples as differential equation and graphical probabilistic models, but also operator algebras, contextsensitive grammars, stochastic field theory of both particle-like and extended objects , partition functions, aspects of algebraic geometry, and dynamical systems defined on static and dynamic graphs. I will explain why, what, and how, and give examples from many spatial and temporal scales: bacterial metabolism, eukaryotic transcriptional regulation and signal transduction, developmental biology of plants including phyllotaxis, and population biology.\r<br>\r<br>http://computableplant.ics.uci.edu/papers/ICSBTutorialWeb.htm\r<br>\r<br>www.icsb-2006.org\r<br>\r<br><!----></P>\r\n\t <p> To see the collection of prior postings to the list,\r\n\t visit the <a href=\"https://mailman.ics.uci.edu/mailman/private/icsb-mjolsness-tutorial/\">Icsb-mjolsness-tutorial\r\n\t\t Archives</a>.\r\n\t (<i>The current archive is only available to the list\n members.</i>)\r\n\t </p>\r\n\t</TD>\r\n </TR>\r\n <TR>\r\n\t<TD COLSPAN=\"2\" WIDTH=\"100%\" BGCOLOR=\"#FFF0D0\">\r\n\t <B><FONT COLOR=\"#000000\">Using Icsb-mjolsness-tutorial</FONT></B>\r\n\t</TD>\r\n </TR>\r\n <tr>\r\n\t<td colspan=\"2\">\r\n <!--\r\n\t To post a message to all the list members, send email to\r\n\t <A HREF=\"mailto:icsb-mjolsness-tutorial@ics.uci.edu\">icsb-mjolsness-tutorial@ics.uci.edu</A>.\r\n -->\r\n\t <p>You can subscribe to the list, or change your existing\r\n\t subscription, in the sections below.\r\n\t</td>\r\n </tr>\r\n <TR>\r\n\t<TD COLSPAN=\"2\" WIDTH=\"100%\" BGCOLOR=\"#FFF0D0\">\r\n\t <B><FONT COLOR=\"#000000\">Subscribing to Icsb-mjolsness-tutorial</FONT></B>\r\n\t</TD>\r\n </TR>\r\n <tr>\r\n\t<td colspan=\"2\">\r\n\t <P>\r\n\t Subscribe to Icsb-mjolsness-tutorial by filling out the following\r\n\t form.\r\n\t This is a closed list, which means your subscription\n will be held for approval. You will be notified of the list\n moderator's decision by email. This is also a hidden list, which means that the\n list of members is available only to the list administrator.\r\n\t <ul>\r\n\t <TABLE BORDER=\"0\" CELLSPACING=\"2\" CELLPADDING=\"2\"\r\n\t\tWIDTH=\"70%\" HEIGHT= \"112\">\r\n\t\t<TR>\r\n\t\t <TD BGCOLOR=\"#dddddd\" WIDTH=\"55%\">Your email address:</TD>\r\n\t\t <TD WIDTH=\"33%\"><INPUT type=\"Text\" name=\"email\" size=\"30\" value=\"\">\r\n\t</TD>\r\n\t<TD WIDTH=\"12%\"> </TD></TR>\r\n <tr>\r\n <td bgcolor=\"#dddddd\" width=\"55%\">Your name (optional):</td>\r\n <td width=\"33%\"><INPUT type=\"Text\" name=\"fullname\" size=\"30\" value=\"\"></td>\r\n\t<TD WIDTH=\"12%\"> </TD></TR>\r\n <TR>\r\n\t<TD COLSPAN=\"3\"><FONT SIZE=-1>You may enter a\r\n\t privacy password below. 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You can\r\n always request a mail-back of your password when you edit\r\n your personal options.\r\n\t \r\n\t</TD>\r\n </TR> \r\n <TR>\r\n\t<TD BGCOLOR=\"#dddddd\">Pick a password:</TD>\r\n\t<TD><INPUT type=\"Password\" name=\"pw\" size=\"15\"></TD>\r\n\t<TD> </TD></TR>\r\n <TR> \r\n\t<TD BGCOLOR=\"#dddddd\">Reenter password to confirm:</TD>\r\n\t<TD><INPUT type=\"Password\" name=\"pw-conf\" size=\"15\"></TD>\r\n\t<TD> </TD></TR>\r\n <tr>\r\n <TD BGCOLOR=\"#dddddd\">Which language do you prefer to display your messages?</TD> \r\n <TD> English (USA)</TD>\r\n <TD> </TD></TR>\r\n \r\n <tr>\r\n\t<td>Would you like to receive list mail batched in a daily\r\n\t digest?\r\n\t </td>\r\n\t<td><input type=radio name=\"digest\" value=\"0\" CHECKED> No\r\n\t <input type=radio name=\"digest\" value=\"1\"> Yes\r\n\t</TD>\r\n </tr>\r\n \r\n <tr>\r\n\t<td colspan=\"3\">\r\n\t <center><INPUT type=\"Submit\" name=\"email-button\" value=\"Subscribe\"></P></center>\r\n </TABLE>\r\n </FORM>\r\n </ul>\r\n </td>\r\n </tr>\r\n <TR>\r\n <TD COLSPAN=\"2\" WIDTH=\"100%\" BGCOLOR=\"#FFF0D0\">\r\n\t<a name=\"subscribers\">\r\n <B><FONT COLOR=\"#000000\">Icsb-mjolsness-tutorial Subscribers</FONT></B></a>\r\n </TD>\r\n </TR>\r\n <tr>\r\n <TD COLSPAN=\"2\" WIDTH=\"100%\">\r\n\t<FORM Method=POST ACTION=\"../roster/icsb-mjolsness-tutorial\">\r\n\t<INPUT name=\"language\" type=\"HIDDEN\" value=\"en\" >(<i>The subscribers list is only available to the list\n administrator.</i>) <p>Enter your admin address and password to visit the subscribers list: <p><center> Admin address: <INPUT type=\"Text\" name=\"roster-email\" size=\"20\" value=\"\">Password: <INPUT type=\"Password\" name=\"roster-pw\" size=\"15\"> <INPUT name=\"SubscriberRoster\" type=\"SUBMIT\" value=\"Visit Subscriber List\" ></center>\r\n\t </FORM>\r\n\t <p>\r\n\t<FORM Method=POST ACTION=\"../options/icsb-mjolsness-tutorial\">\r\n\tTo unsubscribe from Icsb-mjolsness-tutorial, get a password reminder,\n or change your subscription options enter your subscription\n email address:\n <p><center> <INPUT name=\"email\" type=\"TEXT\" value=\"\" size=\"30\" > <INPUT name=\"UserOptions\" type=\"SUBMIT\" value=\"Unsubscribe or edit options\" ><INPUT name=\"language\" type=\"HIDDEN\" value=\"en\" ></center> If you leave the field blank, you will be prompted for\n your email address\r\n\t\t</FORM>\r\n </td>\r\n </tr>\r\n </table>\r\n<hr><address><a href=\"../listinfo/icsb-mjolsness-tutorial\">Icsb-mjolsness-tutorial</a> list run by <a href=\"mailto:icsb-mjolsness-tutorial-owner@ics.uci.edu\">emj at ics.uci.edu</a><br><a href=\"../admin/icsb-mjolsness-tutorial\">Icsb-mjolsness-tutorial administrative interface</a> (requires authorization)<br><a href=\"../listinfo\">Overview of all ics.uci.edu mailing lists</a><p>\n<table WIDTH=\"100%\" BORDER=\"0\">\n <tr>\n <td><img src=\"/icons/mailman.jpg\" alt=\"Delivered by Mailman\" border=0><br>version 2.1.15</td>\n <td><img src=\"/icons/PythonPowered.png\" alt=\"Python Powered\" border=0></td>\n <td><img src=\"/icons/gnu-head-tiny.jpg\" alt=\"GNU's Not Unix\" border=0></td>\n </tr>\n</table>\n</address>\r\n</BODY>\r\n</HTML>\r\n\n", "encoding": "Windows-1252"} |