1 line
8.4 KiB
JSON
1 line
8.4 KiB
JSON
{"url": "http://motifmap-rna.ics.uci.edu/", "content": "<!doctype html>\n<html class=\"no-js\" lang=\"en\">\n<head>\n<meta charset=\"utf-8\"/>\n<link rel=\"shortcut icon\" type=\"image/x-icon\" href=\"static/favicon.ico\" />\n<meta name=\"viewport\" content=\"width=device-width, initial-scale=1.0\"/>\n<title>MotifMap | RNA </title>\n<link rel=\"stylesheet\" href=\"/static/foundation.min.css\">\n<style>\n.searcher {\n color: transparent;\n font-size: 2rem;\n letter-spacing: 5px;\n border: 4px solid transparent;\n border-image: linear-gradient(45deg, orange, skyblue);\n border-image-slice: 1;\n background: linear-gradient(45deg, orange, skyblue);\n background-clip: border-box;\n transition: all 0.2s ease; }\n .searcher:hover {\n border-image: linear-gradient(45deg, #2ecc71, orange);\n background: linear-gradient(45deg, #2ecc71, orange); }\n</style>\n</head>\n<body>\n\n<div class=\"top-bar\">\n<div class=\"row\">\n<div class=\"top-bar-left\">\n<ul class=\"dropdown menu\" data-dropdown-menu>\n<li class=\"menu-text\">MotifMap-RNA</li>\n<li><a href=\"/help\">Help</a></li>\n</ul>\n</div>\n\n</div>\n</div>\n\n<br>\n\n\n<div class=\"row\">\n <div class=\"medium-7 large-6 columns\">\n <h1>RNA Binding Proteins</h1>\n <p class=\"subheader\">Searchable database for known RNA-binding proteins and their binding sites discoverd by the MotifMap-RNA system.</p>\n <a href=\"static/rbp.tar.gz\" class=\"button\">Download Full Datasets</a>\n </div>\n <div class=\"medium-7 large-6 columns\">\n\n <div class=\"row column\">\n <div class=\"column\">\n <div class=\"row\">\n <h5>Please Select</h5>\n <select id=\"motifmap_rbp_database\">\n \n <option value=\"MotifMap_RBP_HUMAN_hg38_Intron\">MotifMap RBP HUMAN hg38 Intron</option>\n \n <option value=\"MotifMap_RBP_HUMAN_hg38_LNC\">MotifMap RBP HUMAN hg38 LNC</option>\n \n <option value=\"MotifMap_RBP_HUMAN_hg38_UTRs\">MotifMap RBP HUMAN hg38 UTRs</option>\n \n <option value=\"MotifMap_RBP_HUMAN_hg38_miRNA\">MotifMap RBP HUMAN hg38 miRNA</option>\n \n <option value=\"MotifMap_RBP_MOUSE_mm10_Intron\">MotifMap RBP MOUSE mm10 Intron</option>\n \n <option value=\"MotifMap_RBP_MOUSE_mm10_LNC\">MotifMap RBP MOUSE mm10 LNC</option>\n \n <option value=\"MotifMap_RBP_MOUSE_mm10_UTRs\">MotifMap RBP MOUSE mm10 UTRs</option>\n \n <option value=\"MotifMap_RBP_MOUSE_mm10_miRNA\">MotifMap RBP MOUSE mm10 miRNA</option>\n \n </select>\n </div>\n <div class=\"row\">\n <ul class=\"vertical medium-vertical menu expanded text-center\">\n <li><a href=\"#\"><div class=\"stat\">371</div><span>RBP Motifs</span></a></li>\n <li><a class=\"large button success\" onclick=\"post('/setdatabase', {database: $('#motifmap_rbp_database option:selected').val() });\">Search</a></li>\n <!--<li> <span class=\"label\">Currently the Mouse Intron and LNC data are undergoing maintainance</span></li>-->\n </ul>\n </div>\n </div>\n </div>\n\n <div class=\"medium-5 large-3 columns\">\n\n </div>\n\n </div>\n</div>\n<div class=\"row column\">\n <hr>\n</div>\n\n\n<div class=\"row\">\n <div class=\"medium-7 large-6 columns\">\n <h1>MotifMap</h1>\n <p class=\"subheader\">The MotifMap system provides comprehensive maps of candidate regulatory elements encoded in the genomes of model species using databases of transcription factor binding motifs, refined genome alignments, and a comparative genomic statistical approach- Bayesian Branch Length Score</p>\n <a href=\"static/motifmap.tar.gz\" class=\"button\">Download Full Datasets</a>\n </div>\n <div class=\"medium-7 large-6 columns\">\n <div class=\"row column\">\n <div class=\"column\">\n <div class=\"row\">\n <h5>Please Select</h5>\n <select id=\"motifmap_database\">\n \n <option value=\"MotifMap_HUMAN_hg19_placental\">MotifMap HUMAN hg19 placental</option>\n \n <option value=\"MotifMap_HUMAN_hg38\">MotifMap HUMAN hg38</option>\n \n <option value=\"MotifMap_MOUSE_mm10\">MotifMap MOUSE mm10</option>\n \n <option value=\"MotifMap_MOUSE_mm9\">MotifMap MOUSE mm9</option>\n \n </select>\n </div>\n <div class=\"row\">\n <ul class=\"vertical medium-vertical menu expanded text-center\">\n <li><a href=\"#\"><div class=\"stat\">2000+</div><span>Motifs</span></a></li>\n <li><a class=\"large button success\" onclick=\"post('/setdatabase', {database: $('#motifmap_database option:selected').val() });\">Search</a></li>\n </ul>\n </div>\n </div>\n </div>\n\n <div class=\"medium-5 large-3 columns\">\n\n </div>\n\n </div>\n</div>\n<div class=\"row column\">\n<hr>\n</div>\n\n\n<div class=\"row\">\n<div class=\"medium-7 large-6 columns\">\n<h1>ChIP-Seq</h1>\n<p class=\"subheader\">ChIP-Seq datasets downloaded from multiple independent sources have been combined to provide a searchable database of experimental binding sites for genes in both mouse and human. Experimental binding sites provide further proof of transcription factor regulation for a specific gene given a known set of criteria for upstream and downstream relative locations.</p>\n<a href=\"https://genome.ucsc.edu/ENCODE/dataMatrix/encodeChipMatrixHuman.html\" class=\"button\">Link to Encode</a>\n<a href=\"static/chipseq.tar.gz\" class=\"button\">Download Full Datasets</a>\n</div>\n<div class=\"medium-7 large-6 columns\">\n\n<div class=\"row column\">\n<ul class=\"vertical medium-vertical menu expanded text-center\">\n<li><a href=\"#\"><div class=\"stat\">200+</div><span>TFs</span></a></li>\n<li><a class=\"large button success\" onclick=\"post('/setdatabase', {database: 'ChIPSeq_MOUSE'});\">Search</a></li>\n</ul>\n</div>\n\n</div>\n</div>\n<div class=\"row column\">\n<hr>\n</div>\n\n\n\n<div class=\"row column\">\n<ul class=\"menu\">\n <li class=\"float\"> <h5>If you use MotifMap-RNA, please cite <a href=\"http://motifmap.ics.uci.edu/\">MotifMap</a> and the following:</h5>\n <br>\n <div class=\"large-16 large-12 columns\">\n <div class=\"row column\">\n <b>MotifMap-RNA: a genome-wide map of RBP binding sites.</b></br>\n <i>Liu Y., Sun S., Bredy T., Wood M., Spitale RC., Baldi P.</i></br>\n <b><i>Bioinformatics</i></b>. \n 2017 Jul 1;33(13):2029-2031. doi: <a href=\"https://doi.org/10.1093/bioinformatics/btx087\">10.1093/bioinformatics/btx087</a>\n </div>\n </div></li>\n<li class=\"float-right\">Copyright 2016</li>\n</ul>\n</div>\n<script src=\"https://code.jquery.com/jquery-2.1.4.min.js\"></script>\n<script src=\"/static/foundation.js\"></script>\n<script>\n $(document).foundation();\n function post(path, params, method) {\n method = method || \"post\"; // Set method to post by default if not specified.\n\n // The rest of this code assumes you are not using a library.\n // It can be made less wordy if you use one.\n var form = document.createElement(\"form\");\n form.setAttribute(\"method\", method);\n form.setAttribute(\"action\", path);\n\n for(var key in params) {\n if(params.hasOwnProperty(key)) {\n var hiddenField = document.createElement(\"input\");\n hiddenField.setAttribute(\"type\", \"hidden\");\n hiddenField.setAttribute(\"name\", key);\n hiddenField.setAttribute(\"value\", params[key]);\n\n form.appendChild(hiddenField);\n }\n }\n\n document.body.appendChild(form);\n form.submit();\n }\n</script>\n</body>\n</html>", "encoding": "ascii"} |